Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LAML | rs2561869 | chr19:33995797 | C/T | 9.91E-6 | 110 | 17.23 | 10.67 | 3 | KM Plot |
| LAML | rs2586135 | chr13:71359500 | C/T | 1.89E-5 | 110 | 0 | 5 | 16.27 | KM Plot |
| LAML | rs2589787 | chr5:38260303 | C/T | 0.000157 | 111 | 15.23 | 13.1 | 0 | KM Plot |
| LAML | rs2605581 | chr11:93161837 | G/A | 5.99E-5 | 110 | 6.13 | 14.13 | 16.3 | KM Plot |
| LAML | rs2605582 | chr11:93163799 | C/T | 5.06E-5 | 111 | 6.13 | 13.1 | 16.3 | KM Plot |
| LAML | rs2605583 | chr11:93164957 | T/A | 5.06E-5 | 111 | 6.13 | 13.1 | 16.3 | KM Plot |
| LAML | rs2605585 | chr11:93171862 | C/T | 6.26E-5 | 108 | 6.13 | 12.17 | 16.77 | KM Plot |
| LAML | rs2605611 | chr11:93229319 | T/G | 4.51E-5 | 107 | 6.13 | 15.17 | 16.3 | KM Plot |
| LAML | rs2608216 | chr11:93149172 | G/A | 5.23E-5 | 111 | 6.13 | 14.13 | 16.27 | KM Plot |
| LAML | rs261375 | chr13:21871882 | A/G | 8.48E-9 | 111 | 0 | 13.1 | 16.2 | KM Plot |
| LAML | rs261404 | chr13:21858162 | T/G | 8.06E-9 | 111 | 16.2 | 13.1 | 0 | KM Plot |
| LAML | rs261406 | chr13:21855854 | G/A | 9.81E-9 | 110 | 16.2 | 14.17 | 0 | KM Plot |
| LAML | rs261407 | chr13:21855213 | C/A | 9.81E-9 | 110 | 16.2 | 14.17 | 0 | KM Plot |
| LAML | rs261423 | chr13:21852331 | A/C | 1.06E-8 | 109 | 16.2 | 13.1 | 0 | KM Plot |
| LAML | rs261426 | chr13:21852789 | T/C | 1.06E-8 | 109 | 16.2 | 13.1 | 0 | KM Plot |